Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs3840047 chr16:89800163 C/CG 0.000194 174 25.87 20.28 36.37 KM Plot
PCPG rs3853618 chr12:31285991 A/C 3.6E-5 170 24.77 28.38 12.22 KM Plot
PCPG rs3892297 chr7:105152173 G/A 2.77E-6 176 20.13 29.43 2.28 KM Plot
PCPG rs3892298 chr7:105152187 A/G 5.56E-5 177 20.17 29.43 2.28 KM Plot
PCPG rs3912029 chr13:114167715 G/T 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs3922633 chr16:89577046 C/T 0.000308 178 26.78 25.53 19.53 KM Plot
PCPG rs3922634 chr16:89576766 T/C 0.000331 177 26.78 25.4 19.53 KM Plot
PCPG rs393329 chr16:12070422 T/C 0.000306 172 24.35 25.2 25.77 KM Plot
PCPG rs3935312 chr16:89592077 G/A 0.000213 175 26.78 25.4 19.53 KM Plot
PCPG rs394616 chr5:179418134 T/G 0.000243 176 24.1 34.73 14.83 KM Plot
PCPG rs4026181 chr3:53508040 A/G 0.000243 172 31.43 24.5 25.53 KM Plot
PCPG rs4072903 chr2:242537132 G/A 2.99E-5 176 25.87 27.27 20.28 KM Plot
PCPG rs4072904 chr2:242537706 G/A 2.99E-5 176 25.87 27.27 20.28 KM Plot
PCPG rs4072905 chr2:242537692 C/T 4.87E-11 177 25.87 24.7 10.3 KM Plot
PCPG rs4074939 chr7:105152528 G/A 5.56E-5 177 20.17 29.43 2.28 KM Plot